Package: edlibR 1.0.2

edlibR: R Integration for Edlib, the C/C++ Library for Exact Pairwise Sequence Alignment using Edit (Levenshtein) Distance

Bindings to edlib, a lightweight performant C/C++ library for exact pairwise sequence alignment using edit distance (Levenshtein distance). The algorithm computes the optimal alignment path, but also can be used to find only the start and/or end of the alignment path for convenience. Edlib was designed to be ultrafast and require little memory, with the capability to handle very large sequences. Three alignment methods are supported: global (Needleman-Wunsch), infix (Hybrid Wunsch), and prefix (Semi-Hybrid Wunsch). The original C/C++ library is described in "Edlib: a C/C++ library for fast, exact sequence alignment using edit distance", M. Šošić, M. Šikić, <doi:10.1093/bioinformatics/btw753>.

Authors:Martin Šošić [aut], Evan Biederstedt [aut, cre]

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edlibR.pdf |edlibR.html✨
edlibR/json (API)

Peer review:

Bug tracker:https://github.com/evanbiederstedt/edlibr/issues

On CRAN:

3 exports 10 stars 1.58 score 9 dependencies 5 scripts 1.0k downloads

Last updated 7 months agofrom:5f3b50df6e. Checks:OK: 9. Indexed: yes.

Exports:aligngetNiceAlignmentnice_print

Dependencies:cligluelifecyclemagrittrRcpprlangstringistringrvctrs