Package: edlibR 1.0.2
edlibR: R Integration for Edlib, the C/C++ Library for Exact Pairwise Sequence Alignment using Edit (Levenshtein) Distance
Bindings to edlib, a lightweight performant C/C++ library for exact pairwise sequence alignment using edit distance (Levenshtein distance). The algorithm computes the optimal alignment path, but also can be used to find only the start and/or end of the alignment path for convenience. Edlib was designed to be ultrafast and require little memory, with the capability to handle very large sequences. Three alignment methods are supported: global (Needleman-Wunsch), infix (Hybrid Wunsch), and prefix (Semi-Hybrid Wunsch). The original C/C++ library is described in "Edlib: a C/C++ library for fast, exact sequence alignment using edit distance", M. Šošić, M. Šikić, <doi:10.1093/bioinformatics/btw753>.
Authors:
edlibR_1.0.2.tar.gz
edlibR_1.0.2.zip(r-4.5)edlibR_1.0.2.zip(r-4.4)edlibR_1.0.2.zip(r-4.3)
edlibR_1.0.2.tgz(r-4.4-x86_64)edlibR_1.0.2.tgz(r-4.4-arm64)edlibR_1.0.2.tgz(r-4.3-x86_64)edlibR_1.0.2.tgz(r-4.3-arm64)
edlibR_1.0.2.tar.gz(r-4.5-noble)edlibR_1.0.2.tar.gz(r-4.4-noble)
edlibR_1.0.2.tgz(r-4.4-emscripten)edlibR_1.0.2.tgz(r-4.3-emscripten)
edlibR.pdf |edlibR.html✨
edlibR/json (API)
| # Install 'edlibR' in R: |
| install.packages('edlibR', repos = c('https://evanbiederstedt.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/evanbiederstedt/edlibr/issues
Last updated 9 months agofrom:5f3b50df6e. Checks:OK: 9. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 25 2024 |
| R-4.5-win-x86_64 | OK | Oct 25 2024 |
| R-4.5-linux-x86_64 | OK | Oct 25 2024 |
| R-4.4-win-x86_64 | OK | Oct 25 2024 |
| R-4.4-mac-x86_64 | OK | Oct 25 2024 |
| R-4.4-mac-aarch64 | OK | Oct 25 2024 |
| R-4.3-win-x86_64 | OK | Oct 25 2024 |
| R-4.3-mac-x86_64 | OK | Oct 25 2024 |
| R-4.3-mac-aarch64 | OK | Oct 25 2024 |
Exports:aligngetNiceAlignmentnice_print
Dependencies:cligluelifecyclemagrittrRcpprlangstringistringrvctrs
