Package: gapmap 1.0.0

gapmap: Drawing Gapped Cluster Heatmaps with 'ggplot2'

The gap encodes the distance between clusters and improves interpretation of cluster heatmaps. The gaps can be of the same distance based on a height threshold to cut the dendrogram. Another option is to vary the size of gaps based on the distance between clusters.

Authors:Ryo Sakai [aut], Evan Biederstedt [cre, aut]

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gapmap.pdf |gapmap.html✨
gapmap/json (API)

Peer review:

Bug tracker:https://github.com/evanbiederstedt/gapmap/issues

On CRAN:

20 exports 1 stars 1.11 score 33 dependencies 1 mentions 20 scripts 272 downloads

Last updated 8 months agofrom:e5664e487a. Checks:OK: 7. Indexed: yes.

Exports:as.gapdataassign_branch_positionsassign_positionscalculate_gapcount_gapextract_listformat_numbergap_datagap_dendrogramgap_heatmapgap_labelgapmapget_most_left_leafget_most_right_leafget_segment_dfis.gapdatamapmap.expset_most_right_leafsum_distance

Dependencies:clicolorspacefansifarverggplot2gluegtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigplyrR6RColorBrewerRcppreshape2rlangscalesstringistringrtibbleutf8vctrsviridisLitewithr