Package: gapmap 1.0.0
gapmap: Drawing Gapped Cluster Heatmaps with 'ggplot2'
The gap encodes the distance between clusters and improves interpretation of cluster heatmaps. The gaps can be of the same distance based on a height threshold to cut the dendrogram. Another option is to vary the size of gaps based on the distance between clusters.
Authors:
gapmap_1.0.0.tar.gz
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gapmap_1.0.0.tgz(r-4.5-any)gapmap_1.0.0.tgz(r-4.4-any)gapmap_1.0.0.tgz(r-4.3-any)
gapmap_1.0.0.tar.gz(r-4.5-noble)gapmap_1.0.0.tar.gz(r-4.4-noble)
gapmap_1.0.0.tgz(r-4.4-emscripten)gapmap_1.0.0.tgz(r-4.3-emscripten)
gapmap.pdf |gapmap.html✨
gapmap/json (API)
| # Install 'gapmap' in R: |
| install.packages('gapmap', repos = c('https://evanbiederstedt.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/evanbiederstedt/gapmap/issues
- sample_tcga - Sample data matrix from the integrated pathway analysis of gastric cancer from the Cancer Genome Atlas (TCGA) study.
Last updated 1 years agofrom:e5664e487a. Checks:8 OK. Indexed: yes.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Feb 15 2025 |
| R-4.5-win | OK | Feb 15 2025 |
| R-4.5-mac | OK | Feb 15 2025 |
| R-4.5-linux | OK | Feb 15 2025 |
| R-4.4-win | OK | Feb 15 2025 |
| R-4.4-mac | OK | Feb 15 2025 |
| R-4.3-win | OK | Feb 15 2025 |
| R-4.3-mac | OK | Feb 15 2025 |
Exports:as.gapdataassign_branch_positionsassign_positionscalculate_gapcount_gapextract_listformat_numbergap_datagap_dendrogramgap_heatmapgap_labelgapmapget_most_left_leafget_most_right_leafget_segment_dfis.gapdatamapmap.expset_most_right_leafsum_distance
Dependencies:clicolorspacefansifarverggplot2gluegtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigplyrR6RColorBrewerRcppreshape2rlangscalesstringistringrtibbleutf8vctrsviridisLitewithr
