Package: gapmap 1.0.0
gapmap: Drawing Gapped Cluster Heatmaps with 'ggplot2'
The gap encodes the distance between clusters and improves interpretation of cluster heatmaps. The gaps can be of the same distance based on a height threshold to cut the dendrogram. Another option is to vary the size of gaps based on the distance between clusters.
Authors:
gapmap_1.0.0.tar.gz
gapmap_1.0.0.zip(r-4.7)gapmap_1.0.0.zip(r-4.6)gapmap_1.0.0.zip(r-4.5)
gapmap_1.0.0.tgz(r-4.6-any)gapmap_1.0.0.tgz(r-4.5-any)
gapmap_1.0.0.tar.gz(r-4.7-any)gapmap_1.0.0.tar.gz(r-4.6-any)
gapmap_1.0.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
gapmap/json (API)
| # Install 'gapmap' in R: |
| install.packages('gapmap', repos = c('https://evanbiederstedt.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/evanbiederstedt/gapmap/issues
Datasets:
- sample_tcga - Sample data matrix from the integrated pathway analysis of gastric cancer from the Cancer Genome Atlas (TCGA) study.
Last updated from:e5664e487a. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 134 | ||
| source / vignettes | OK | 216 | ||
| linux-release-x86_64 | OK | 137 | ||
| macos-release-arm64 | OK | 78 | ||
| macos-oldrel-arm64 | OK | 81 | ||
| windows-devel | OK | 93 | ||
| windows-release | OK | 98 | ||
| windows-oldrel | OK | 87 | ||
| wasm-release | OK | 108 |
Exports:as.gapdataassign_branch_positionsassign_positionscalculate_gapcount_gapextract_listformat_numbergap_datagap_dendrogramgap_heatmapgap_labelgapmapget_most_left_leafget_most_right_leafget_segment_dfis.gapdatamapmap.expset_most_right_leafsum_distance
Dependencies:clicpp11farverggplot2gluegtableisobandlabelinglifecyclemagrittrplyrR6RColorBrewerRcppreshape2rlangS7scalesstringistringrvctrsviridisLitewithr
An introduction to the gapmap package
Last update: 2021-04-18
Started: 2021-04-18
Example with a TCGA dataset
dendsort | dendrograms
Last update: 2021-04-18
Started: 2021-04-18
